Bioconversion of Single-­Carbon Effluents into Biofuels and Biofuel Precursors

More about this project:

Biomass is a complex class of material with great potential as feedstock for the production of a wide variety of compounds, including biofuels. Its complexity, based on the variety and composition of the materials making up biomass depending on origin or source, means that a large variety of approaches must be used, ideally in an integrated manner, to fully realize this potential.


Methane and methanol are common by-products of many industrial sectors, including energy, agriculture and forestry. In fact, they are often found in waste effluents of many biomass conversion processes, be it from chemical (e.g. methanol from pulping), biological (e.g. methane from anaerobic digestion) or thermal (e.g. methane from pyrolysis) processing.


Rather than be disposed of as waste or used in marginally economically viable strategies, these single-carbon compounds (C1) can be used as low-cost feedstocks for the production of valuable bioproducts, such as biofuels and biofuel precursors, through bioconversion by methylotrophic bacteria – bacteria that can use C1 compounds as sole carbon source. This approach can be advantageous on many fronts.


- Most importantly methylotrophs convert methane and methanol to higher value products, such as designer fuel or isoprenoids for jet fuel. This, also considering that C1 compounds must often be disposed of at a cost, provides an economically viable alternative to by-product management.


- Because methylotrophic bacteria are generally robust and versatile, little or no pretreatment is required before sending C1 effluent streams for bioconversion, further improving the cost-effectiveness and economic prospects of the biofuels produced.


- Climate change creates a strong motivation to reduce industrial emissions of greenhouse gases (GHG). Methane is a common low-value industrial by-product with a global warming potential 28-36 times greater than CO2 based on a 100-year period. It is sometimes recovered for energy production or simply flared, releasing CO2. Hence, the conversion of methane effluents to valuable products can greatly reduce GHG emissions and the carbon footprint of methane-emitting processes.


- Finally, the possibility of converting methane and methanol, rather than sugars, to biofuels means there is no impact on the food chain.


The aim of this project is to develop a platform technology for the bioconversion of C1 compounds resulting from forestry activities (fermentation, thermal processing, anaerobic digestion) into biofuels (alcohols, lipids) and biofuel precursors (e.g. isoprenoids). This platform will be integrated in the greater context of biomass conversion by, for example, using by-product streams from other bioconversion activities (e.g. anaerobic digestion and pyrolysis) as feedstock.


The collaboration between the Sauvageau (Engineering) and Stein (Science) labs will create a unique setting for the development and industrialization of methylotrophic bacteria. The main areas explored will be:



  • the identification of biofuels and biofuel precursors naturally produced by methylotrophic bacteria

  • the mapping of relevant metabolic pathways

  • the implementation of advanced bioprocessing strategies to methylotrophic cultures for improved productivity

  • the development and adaptation of a methanotrophic bacteria chassis for industrial applications

  • the production of high value biofuels and biofuel precursors from methylotrophic bacteria

  • the development of efficient cell lysis and product recovery strategies

  • scale up and integration with point source industrial emitters of methane


This project will impact the energetic, economic, environmental and social aspects of biomass as a source of energy. The platform technology develop will be implementable in a variety of sectors, from energy to forestry, agriculture to waste treatment.

Microbes, Small but Important Problem Solvers.

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3-Minute Thesis Presentation (1st place)

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Academic Award

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Alberta Graduate Excellence Scholarship (AGES)

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Alberta Graduate Student Scholarship

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Alberta Innovates Graduate Student Scholarship

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Alexander Graham Bell Canada Graduate Scholarship - NSERC CGS-M

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Alexander Graham Bell Canada Graduate Scholarship Doctoral

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Beakerhead Scholarship

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Best Oral Presentation Award ( Graduate Research Symposium)

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Biological Sciences Teaching Assistant Award

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Captain Thomas Farrell Greenhalgh Memorial Scholarships in Chemical Engineering

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Certificate for Teaching Innovation

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Dean's Research Award

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Dr David Schindler Undergraduate Scholarship in Environmental Science

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Kay Ball Memorial Graduate Student Research Travel Award

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Leonard E. Gads Teaching Assistant Award

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Letter of Commendation for Excellence in Teaching

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MITACS Globalink Research Internship

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Opportunity Fund

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Outstanding Mentorship Award in Undergraduate Research and Creative Activities

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Paranchych Graduate Fund in Microbiology

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President's Doctoral Prize of Distinction

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Queen Elizabeth II Graduate Scholarship – Doctoral level

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Second Place Best Poster

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Undergraduate Student Research Award (USRA)

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University of Alberta Research Experience (UARE) award

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Walter H. Johns Graduate Fellowship

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Westmoreland Coal Company Graduate Scholarship in Environmental Engineering

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Women in STEM Scholarship

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Communities and Collections Graduate Studies and Research, Faculty of / Theses and Dissertations Usage 155 views 178 downloads Isolation and Characterization of Lytic and Lysogenic Phages for Methanotrophic Bacterial Systems

Master Thesis

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Environmentally friendly polymer detection – green fluorescence for green planet!

Conference/Symposium/Workshop Contribution

The long-term relationship between microbial metabolism and greenhouse gases

Lisa Stein

Peer-Reviewed Journal Article

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"Investigating the solubility of isoprenoids in switchable solvents "

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6th Nepalese Scholars’ Symposium

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A Microbial Platform for the Bioconversion of Methane to Biofuels and Fuel Additives

Dominic Sauvageau

Conference/Symposium/Workshop Contribution

A multi-level “-omics” approach to the study of the growth regulation of methanotrophs

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

A multi-level “-omics” approach to the study of the growth regulation of methanotrophs. Future Energy Systems Research Symposium.

Dominic Sauvageau, Lisa Stein

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ASM Microbe- Session co-convener

Lisa Stein

Conference/Symposium/Workshop Contribution

Adaptation of Methylobacterium extorquens AM1 to growth at low pH

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Adaptation of Methylobacterium extorquens AM1 to growth at low pH

Conference/Symposium/Workshop Contribution

Adaptation of Methylomicrobium album BG8 to growth at low pH

Master Thesis

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Adaptive Evolution of Methylomicrobium album BG8 on a low pH medium

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Advanced bioreactor operation improve methanol bioconversion in Methylotuvimicrobium buryatense 5GB1C

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

An overlooked influence of reactive oxygen species on ammonia-oxidizing microbial communities in redox-fluctuating aquifers

Lisa Stein

Peer-Reviewed Journal Article

Application of non model microbes in Industry

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Application of non model microbes in Industry

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Are isoprenoids the future for renewable energy

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Bacteria!

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Bacterial methane bioconversions

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Bacteriohemerythrin at the Crossroads; Hemerythrin from Methylomonas denitrificans FJG1 sets methanotrophs apart

Dominic Sauvageau, Lisa Stein

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Bacteriophages - Research Zone

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Bacteriophages as a sustainable and reliable means of product recovery

Dominic Sauvageau, Lisa Stein

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Because there is no planet B!

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Best of Both Worlds: How bacteria can reduce greenhouse gas emissions and lead to more sustainable energy

Dominic Sauvageau

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Big Careers from the Tiniest Biology: The road to becoming a microbiologist

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Big Careers from the Tiniest Biology: The road to becoming a microbiologist

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Big Careers from the Tiniest Biology: The road to becoming a microbiologist

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Big Careers from the Tiniest Biology: the road to becoming a microbiologist

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Big Solutions from the Smallest Lifeforms

Lisa Stein

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Bioconversion of Methane to Biodegradable Plastic

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Bioconversion of Methane to Biopolymers: An Ecofriendly and Sustainable Approach to Mitigate Environmental Problems

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Bioconversion of methane emissions into biofuels and biofuel precursors

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Bioconversion of methane to biodegradable plastic

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Bioconversion of methane to biodegradable plastic

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Bioconversion of methane to biodegradable plastic

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Bioconversion of methane to biodegradable plastic: Metabolic route from greenhouse gas to green product

Dominic Sauvageau, Lisa Stein

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Bioconversion of methane to biofuels and biopolymers. EngTALK

Dominic Sauvageau

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Bioconversion of single-carbon substrates in fed-batch cultures.

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Bioconversion of waste methane emissions to value-added biofuels and biomaterials

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Biomass production of Methylotuvimicrobium buryatense 5GB1C using two types of advanced bioreactor operations

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Biomass: Microbial bioconversion to fuels and products

Lisa Stein

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Biomat connect Industry-Academia Mixer

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Biotechnology for a Sustainable Environment

Lisa Stein

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Biotechnology to bioconvert cheap compounds into valuable products

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Breaking Walls of GHG emission

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Breaking Walls of GHG emission

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Breaking the walls of climate change

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Can Pink Bacteria Help Mitigate Methane Emissions

Dominic Sauvageau, Lisa Stein

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Can pink bacteria help mitigate methane emissions?

Dominic Sauvageau, Lisa Stein

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Cell lysis and enhanced product recovery from methanotrophic bacteria

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Cell lysis and enhanced product recovery from methanotrophic bacteria. Future Energy Systems Research Symposium.

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Changing Methane Paradigms

Lisa Stein

Conference/Symposium/Workshop Contribution

Characterizing Outer Membrane Vesicles in Methanotrophic Bacteria

Dominic Sauvageau, Lisa Stein

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Characterizing Outer Membrane Vesicles in the Methanotroph Methylomicrobium album BG8

Master Thesis

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Chinese Assoc. for Microbial Ecology

Lisa Stein

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Climate Change Mitigation and Adaptation in Agriculture: what can biotechnology do?

Lisa Stein

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Collaborative Appointment at the National Renewable Energy Laboratory, US Department of Energy

Visiting Researcher (outgoing)

Combined effects of carbon and nitrogen source to optimize growth of proteobacterial methanotrophs
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Dominic Sauvageau, Lisa Stein

Peer-Reviewed Journal Article

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Complete genome sequence of Methylomonas denitrificans strain FJG1, an obligate aerobic methanotroph that can couple methane oxidation to denitrification

Lisa Stein

Peer-Reviewed Journal Article

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Converting Fugitive Methane Emissions into Value-Added Products

Lisa Stein

Conference/Symposium/Workshop Contribution

Development of a Methanotroph Chassis: Genetic engineering of Methylomicrobium album BG8 for production of isoprenoids from C1 compounds

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Development of a methanotroph chassis: genetic engineering of Methylomicrobium album BG8 for production of value-added products.

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Development of a nutrient supply-based process for industrial-scale mitigation of methane emissions by bacteria

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Development of a plasmid-based gene expression system for methanotrophs

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Development of processing strategies to enhance the efficiency of the growth of the gammaproteobacterial methanotroph Methylomicrobium album BG8

Doctoral Thesis/Dissertation

Diverse bacteriohemerythrin genes of Methylomonas denitrificans FJG1 provide insight into the survival and activity of proteobacterial methanotrophs under hypoxia

Dominic Sauvageau, Lisa Stein

Peer-Reviewed Journal Article

Don’t underrate undergraduate research

Article in popular media

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Dynamic DNA

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EDI survey and annual report for the Biology Graduate Students’ Association

Misc: Survey

Effect of copper on the growth of methanotrophic bacteria in a fed-batch process

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Effect of isoprenoids on the growth of industrially relevant methanotrophs

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Energy Solutions

Lisa Stein

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Environmentally friendly polymer detection using fluorescent proteins

Conference/Symposium/Workshop Contribution

Enzyme Activity and Drug Design

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Examining Protein Cargo and the Potential Physiological Mechanisms of Outer Membrane Vesicles (OMVs) in Methanotrophic Bacteria

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

FES Student Profile article

Misc: Online article

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Falling Walls Lab 2019 impresses with breakthrough research

Article in popular media

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Free Shipping? Exploring the Protein Cargo Content of Outer Membrane Vesicles (OMVs) in Methanotrophic Bacteria

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Genes = Tools

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Genome Scale Metabolic Modelling of a Methanotroph for Sustainable Production of Biofuels and Bioplastics

Conference/Symposium/Workshop Contribution

Genomic taxonomy of the gamma methanotrophs

Conference/Symposium/Workshop Contribution

Genomic taxonomy of the gammaproteobacterial methanotrophs (Methylococcales) calls for the reclassification of members within this order

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Gold College --lab training for student

Lisa Stein

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Growth Characterization and Transcriptomics of Methanotrophic Bacteria as Effected by Carbon and Nitrogen Sources

Doctoral Thesis/Dissertation

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Harnessing the potential of methanotrophs: From understanding environmental strains to creating a bioconversion platform

Dominic Sauvageau

Conference/Symposium/Workshop Contribution

How Can Agrigenomics Help to Address Climate Change?

Lisa Stein

Conference/Symposium/Workshop Contribution

Identification and characterization of lysogenized phages in methanotrophic

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Identification and characterization of lysogenized phages in methanotrophic bacteria

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Impact of substrates on development of industrial processes for methylotrophs.

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Improving Extraction of Biodegradable Plastics from Bacteria

Dominic Sauvageau, Lisa Stein

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In vivo and in vitro quantification of polyhydroxybutyrate (PHB) in bacteria

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

In vivo and in vitro quantification of polyhydroxybutyrate (PHB) in bacteria

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

In vivo quantification of polyhydroxybutyrate (PHB ) in the alphaproteobacterial methanotroph, Methylocystis sp. Rockwell

Dominic Sauvageau, Lisa Stein

Peer-Reviewed Journal Article

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Integrative Genome-Scale Metabolic Modeling Reveals Versatile Metabolic Strategies for Methane Utilization in Methylomicrobium album BG 8

Lisa Stein

Peer-Reviewed Journal Article

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Interactions of PHB and switchable hydrophilicity solvents: A more sustainable approach to PHB recovery

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Interactions of PHB and switchable hydrophilicity solvents: A more sustainable approach to PHB recovery

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Introductory microbiology demonstration

Lisa Stein

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Isolating Outer Membrane Vesicles from Methanotrophic Bacteria

Dominic Sauvageau, Lisa Stein

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Life Lesson Learned from Microorganisms

Conference/Symposium/Workshop Contribution

Lysogenized phages of methanotrophic bacteria show a broad and untapped genetic diversity

Dominic Sauvageau, Lisa Stein

Peer-Reviewed Journal Article

Lysogenized phages of methanotrophic bacteria show a broad genetic diversity

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Mapping a Microbial Factory: How Nutrients Affect Gene Expression in Methane-Utilizing Bacteria

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Metabolic mapping of Methylomicrobium album strain BG8

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Metabolome profiles of the alphaproteobacterial methanotroph Methylocystis sp. Rockwell in response to carbon and nitrogen source

Dominic Sauvageau, Lisa Stein

Peer-Reviewed Journal Article

Methane Bioconversions

Lisa Stein

Conference/Symposium/Workshop Contribution

Methane transformation using bacteria: an innovative approach. 3-MT competition

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Methane-munching microbes and the carbon footprint of climate change

Lisa Stein

Article in popular media

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Methanol bioconversion in Methylotuvimicrobium buryatense 5GB1C through self-cycling fermentation

Dominic Sauvageau, Lisa Stein

Peer-Reviewed Journal Article

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Microbes & Climate Change

Lisa Stein

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Microbial methane munchers offer a shield from the scorch

Lisa Stein

Article in professional or trade journals

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Microbiome of the freshwater sponge Ephydatia muelleri shares compositional and functional similarities with marine sponges

Lisa Stein

Peer-Reviewed Journal Article

Optimization of Methane Feed and N:C Ratio for Biomass and Polyhydroxybutyrate Production by the Alphaproteobacterial Methanotroph Methylocystis sp. Rockwell

Dominic Sauvageau, Lisa Stein

Peer-Reviewed Journal Article

Optimization of bacterial growth and polyhydroxybutyrate (PHB) yield by Methylocystis sp. Rockwell

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Optimization of growth and polyhydroxybutyrate (PHB) production from Methylocystis sp. strain Rockwell

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Optimizing methanotroph bioproduction through growth strategies and strain adaptation

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Optimizing methanotroph biotechnology through growth strategies

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Optimizing methanotroph biotechnology through growth strategies and strain adaptation.

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Permafrost Dialogues

Lisa Stein

Conference/Symposium/Workshop Contribution

Phages are Friends!

Other Event

Phylogenomic analysis of the gammaproteobacterial methanotrophs (order Methylococcales) calls for the reclassification of members at the genus and species levels

Dominic Sauvageau, Lisa Stein

Peer-Reviewed Journal Article

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Physiological and Genetic Investigations into Putative Sulfur Oxidation Systems of Methylococcales.

Doctoral Thesis/Dissertation

Positron-emitting tracers spatially resolve unexpected biogeochemical relationships linked with methane oxidation in Arctic soils

Lisa Stein

Peer-Reviewed Journal Article

Presentation to UofA Senate Plenary Meeting

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Production and detection of polyhydroxybutyrate (PHB) in the alphaproteobacterial methanotroph Methylocystis sp. Rockwell

Doctoral Thesis/Dissertation

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Reduction of greenhouse gas emissions through the bioconversion of methane from Albertan industrial sectors.

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Revisiting Self-cycling Fermentation – New Characterization, Scheme, and Application

Doctoral Thesis/Dissertation

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Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (RubisCO) Is Essential for Growth of the Methanotroph Methylococcus capsulatus Strain Bath

Peer-Reviewed Journal Article

Science for a Sustainable Planet

Lisa Stein

Conference/Symposium/Workshop Contribution

Sea-ice algae are losing their homes and the ocean is at risk of starving

Lisa Stein

Article in popular media

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Semi-continuous saccharification-fermentation, a new strategy to process lignocellulosic biomass at high solid loadings

Dominic Sauvageau, Jorge Arturo Gonzalez Rios

Conference/Symposium/Workshop Contribution

Spinning up electric buses

Article in popular media

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Substrate-dependent growth variability across model methanotrophic strains

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Sustainable Solutions from the Smallest Organisms

Lisa Stein

Conference/Symposium/Workshop Contribution

Switchable solvents for the reversible dissolution of poly(3-hydroxybutyrate)

Dominic Sauvageau, Lisa Stein

Peer-Reviewed Journal Article

Synthesis and degradation of polyhydroxybutyrate (PHB) under different nutrient combinations in the alphaproteobacterial methanotroph, Methylocystis sp. Rockwell

Doctoral Thesis/Dissertation

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Systematic Development of a Methanotroph Chassis for transforming wastewater methane emissions to value added products: Predictive modelling and genetic engineering of Methylomicrobium album BG8

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

Systematic Development of a Methanotroph chassis for the production of value-added products from C1 waste of Agriculture and Forestry: Predictive modeling and genetic engineering of Methylomicrobium album BG8

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

TWOSE Research Zone Science Communications Training Program

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The Application of Switchable Solvents to the Extraction of Bioproducts from Methanotrophic Bacteria

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

The Application of Switchable Solvents to the Extraction of Bioproducts from Methanotrophic Bacteria

Dominic Sauvageau, Lisa Stein

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The Application of Switchable Solvents to the Extraction of Bioproducts from Methanotrophic Bacteria

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The Ins and Outs of OMVs; Examining the Contents and Causes of Outer Membrane Vesicles (OMVs) in Methanotrophic Bacteria

Dominic Sauvageau, Lisa Stein

Other Event

The Ins and Outs of OMVs; Examining the Contents and Causes of Outer Membrane Vesicles (OMVs) in Methanotrophic Bacteria

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

The application of a switchable solvent to the extraction of polyhydroxybutyrate from methanotrophic bacteria.

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

The combined effect of methane and methanol on growth and PHB production in the alphaproteobacterial methanotroph Methylocystis sp. Rockwell.

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

The double life of Methanoperedens

Lisa Stein

Peer-Reviewed Journal Article

The hunt for viruses that infect methane consuming bacteria

Dominic Sauvageau, Lisa Stein

Conference/Symposium/Workshop Contribution

The influence of self-cycling fermentation long-and short-cycle schemes on Saccharomyces cerevisiae and Escherichia coli

Dominic Sauvageau, Lisa Stein

Peer-Reviewed Journal Article

The semi-continuous saccharification-fermentation, a new strategy to process lignocellulosic biomass at high solid holdings.

Dominic Sauvageau, Jorge Arturo Gonzalez Rios

Conference Proceedings

Three-Minute Theses Workshop

Conference/Symposium/Workshop Contribution

Transcriptomic Analysis of Saccharomyces cerevisiae Undergoing Self-Cycling Fermentation

Dominic Sauvageau

Conference/Symposium/Workshop Contribution

Transcriptomic analysis of synchrony and productivity in self-cycling fermentation of engineered yeast producing shikimic acid

Dominic Sauvageau, Lisa Stein

Peer-Reviewed Journal Article

Transcriptomic and metabolomic responses to carbon and nitrogen sources in Methylomicrobium album BG8

Dominic Sauvageau, Lisa Stein

Peer-Reviewed Journal Article

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Turning Greenhouse Gases into Green Products

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Turning green house gases into green products - 3MT competition

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USchool Hands-on demonstration

Lisa Stein

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University of Alberta 3 minute thesis (3MT) competition

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Uschool Hands-on demonstration

Lisa Stein

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Visit to US-DOE NREL

Visiting Researcher (outgoing)

WISEST Outreach Lead

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WISEST Panelist STEM Careers

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WISEST Panelist/Networking Mentor

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WISEST Programming Committee Member

Misc: Committee

Windsor Park School Science Blitz

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